Cheesecake brownies are the ultimate indulgence—but what if we told you they can also fit into your healthy lifestyle? These rich, chocolaty treats combine the decadent flavors of creamy cheesecake and fudgy brownies while sneaking in wholesome ingredients like almond flour and honey. They’re naturally gluten-free and lighter than traditional versions without sacrificing the dreamy texture and flavor you crave.

We created this recipe to bring you the perfect balance of health and indulgence. After testing multiple variations, we’ve nailed a version that’s irresistibly satisfying and nutritious. It’s one of our most-loved recipes, and we can’t wait for you to try it! Whether you’re whipping these up for dessert or prepping ahead for a week’s worth of treats, they’ll deliver every time.
Why These Cheesecake Brownies Are Good for You
- Made with almond flour, which is rich in healthy fats, vitamin E, and fiber.
- Sweetened with raw honey, a natural sweetener with antioxidants instead of refined sugar.
- Contains cocoa powder, known for its heart-healthy flavonoids and mood-boosting properties.
- A naturally gluten-free recipe that’s also easy to customize for keto or other low-carb diets.
- Lower in fat thanks to reduced-fat cream cheese, offering the same creamy taste with fewer calories.
Wholesome Ingredients for These Cheesecake Brownies
Creating nutritious yet indulgent desserts means choosing ingredients that work as hard as they taste. Here’s a look at some of the powerhouses in these easy cheesecake brownies:
- Almond Flour: This gluten-free ingredient is rich in protein and healthy fats, making it a fantastic alternative to traditional flour. Look for finely ground varieties like Bob’s Red Mill for the best texture.
- Raw Honey: A natural sweetener filled with antioxidants and trace nutrients that provide sweetness without a sugar crash. Maple syrup can also be used as a substitute for a slightly different flavor.
- Cocoa Powder: Pure, unsweetened cocoa powder adds depth of chocolate flavor along with health benefits like improved circulation and antioxidants. Opt for high-quality organic cocoa for a rich taste.
- Light Cream Cheese: Using reduced-fat cream cheese keeps things creamy without overloading on calories or saturated fat. Be sure to let it soften for a smooth batter.
Cheesecake Brownies at a Glance
- Servings: 12 servings
- Prep Time: 15 minutes
- Cook Time: 30 minutes
- Total Time: 45 minutes
Cheesecake Brownies Ingredients
- Nonstick cooking spray
- 2 large eggs
- 3/4 cup finely ground almond meal or flour
- 1/3 cup unsweetened cocoa powder
- 1/8 teaspoon kosher salt
- 3/4 teaspoon baking soda
- 1/4 cup water
- 1/2 cup raw honey
- 2 teaspoons vanilla extract, divided
- 1/2 cup semisweet chocolate chips
- 6 ounces 1/3 less fat cream cheese, softened
- 2 tablespoons sugar
How to Make Cheesecake Brownies
- Preheat your oven to 325°F. Spray a 9×9-inch baking pan with nonstick cooking spray and line it with parchment paper, leaving a 2-inch overhang for easy removal later.
- In a medium bowl, whisk 1 whole egg and 1 egg yolk (reserve the white). Add 1/4 cup water, raw honey, and 1 teaspoon of vanilla extract. Stir until everything is combined.
- In a separate large bowl, whisk together the almond flour, cocoa powder, kosher salt, and baking soda. Gently fold the wet mixture into the dry ingredients until just combined.
- Stir in semisweet chocolate chips, ensuring they’re evenly distributed. Pour the batter into your prepared pan, smoothing out the top with a spatula.
- In another bowl, microwave the cream cheese until softened, then mix in sugar, reserved egg white, and the remaining 1 teaspoon of vanilla extract until smooth.
- Gently pour the cream cheese mixture over the brownie batter, spreading it evenly. Use a toothpick or knife to swirl the two layers together for a marbled effect.
- Bake for approximately 30 minutes, or until a toothpick inserted in the center comes out clean.
- Allow the brownies to cool completely (at least 30 minutes) before slicing into 12 bars. Serve and enjoy!
How to Customize These Cheesecake Brownies for Your Diet
- Keto-Friendly: Swap honey for a keto-approved sweetener like erythritol and use sugar-free chocolate chips.
- Dairy-Free: Replace cream cheese with a dairy-free alternative like cashew cream.
- Nut-Free: Substitute almond flour with oat flour or sunflower seed flour for a nut-free version.
- Lower Calorie: Use stevia in place of honey and low-fat Greek yogurt instead of cream cheese.
Our Team’s Tips for the Best Cheesecake Brownies
- Let your cream cheese soften before mixing to avoid lumps in the cheesecake layer.
- Chill completely before cutting to ensure clean, even slices.
- For meal prep, make a double batch and freeze individual bars for up to three months.
- Use high-quality cocoa powder for maximum chocolate flavor.
- Experiment with add-ins like crushed nuts or a sprinkle of espresso powder for a unique twist.
Cheesecake Brownies FAQs
How do I store leftover cheesecake brownies?
Store in an airtight container in the refrigerator for up to five days. For longer storage, freeze for up to three months.
Can I make these brownies vegan?
Yes! Replace the eggs with flax eggs and the cream cheese with a vegan alternative to make these homemade cheesecake brownies vegan-friendly.
Is almond flour keto-friendly?
Absolutely! Almond flour is perfect for low-carb and keto diets due to its high fat content and low net carbs.
What’s the best way to reheat frozen brownies?
Thaw them at room temperature for 3-4 hours, then warm slightly in the microwave or oven for a freshly-baked texture.
If you’re ready to enjoy dessert with a dose of nutrition, give these cheesecake brownies a try! What’s your favorite tweak to make healthy desserts even better?

Healthy, Creamy, and Fudgy Cheat-Worthy Cheesecake Brownies
Ingredients
- 1 Nonstick cooking spray
- 2 large eggs
- 3/4 cup finely ground almond meal or flour
- 1/3 cup unsweetened cocoa powder
- 1/8 teaspoon kosher salt
- 3/4 teaspoon baking soda
- 1/4 cup water
- 1/2 cup raw honey
- 2 teaspoons vanilla extract divided
- 1/2 cup semisweet chocolate chips
- 6 ounces 1/3 less fat cream cheese softened
- 2 tablespoons sugar
Instructions
- Preheat your oven to 325°F. Spray a 9×9-inch baking pan with nonstick cooking spray and line it with parchment paper, leaving a 2-inch overhang for easy removal later.
- In a medium bowl, whisk 1 whole egg and 1 egg yolk (reserve the white). Add 1/4 cup water, raw honey, and 1 teaspoon of vanilla extract. Stir until everything is combined.
- In a separate large bowl, whisk together the almond flour, cocoa powder, kosher salt, and baking soda. Gently fold the wet mixture into the dry ingredients until just combined.
- Stir in semisweet chocolate chips, ensuring they’re evenly distributed. Pour the batter into your prepared pan, smoothing out the top with a spatula.
- In another bowl, microwave the cream cheese until softened, then mix in sugar, reserved egg white, and the remaining 1 teaspoon of vanilla extract until smooth.
- Gently pour the cream cheese mixture over the brownie batter, spreading it evenly. Use a toothpick or knife to swirl the two layers together for a marbled effect.
- Bake for approximately 30 minutes, or until a toothpick inserted in the center comes out clean.
- Allow the brownies to cool completely (at least 30 minutes) before slicing into 12 bars. Serve and enjoy!
